Проверил, докладываю в Firefox и Opera ни чего не изменилось проблемы те же. В IE6.0 появилась возможность просмотреть редактирование привилегий но без сохранения результатов, новую базу данных создать удается а вот таблицы в ней нет.
То есть если я правильно понимаю то это проблема не с моим сервером а с браузером???
дополнительно.
Сейчас попробовал обновить IE8.0, после чего в нем также перестали работать все возможности кроме SQL запросов. Вернулся к началу 
Вот последние строки из лога Апача
[Wed Jun 1 17:28:38 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:38 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:38 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:47 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:28:47 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:47 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:47 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:52 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:28:52 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:52 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:52 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:59 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:28:59 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:59 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:28:59 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:35 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:29:35 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:35 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:35 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:37 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:29:37 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:37 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:29:37 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:07 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:30:07 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:07 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:07 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:34 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:30:34 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:34 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:30:34 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:25 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:38:25 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:25 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:25 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:27 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:38:27 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:27 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:27 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:30 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:38:30 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:30 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:38:30 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:06 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:43:06 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:06 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:06 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:48 2011] [error] PHP Warning: chdir() has been disabled for security reasons in /usr/local/www/phpMyAdmin/js/messages.php on line 9
[Wed Jun 1 17:43:48 2011] [error] PHP Warning: require_once(): Unable to access ./libraries/common.inc.php in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:48 2011] [error] PHP Warning: require_once(./libraries/common.inc.php): failed to open stream: No such file or directory in /usr/local/www/phpMyAdmin/js/messages.php on line 21
[Wed Jun 1 17:43:48 2011] [error] PHP Fatal error: require_once(): Failed opening required './libraries/common.inc.php' (include_path='.:/usr/local/share/pear') in /usr/local/www/phpMyAdmin/js/messages.php on line 21
Простите за столь внушительный перечень но не знаю как его сделать компактнее.